Protein Identification and Quantification
Protein sequence identification is a computer intensive task and is often left to dedicated, powerful computers.
MaxQuant*
Assign a sequence database: Global Parameters > Sequences > Add
MaxQuant has an internal list of protein modifications that can be edited: Configurations > Modifications
Likewise an internal list of proteases: Configurations > Proteases
Load mass spectrometry data: Raw data > Load/Load Folder
* S. Tyanova et al., “The MaxQuant computational platform for mass spectrometry-based shotgun proteomics.,” Nat Protoc, vol. 11, no. 12, pp. 2301-2319, 2016
Comments: matthias.wilm@ucd.ie